Publications

Journal

2019

  1. Chan, W. L., Xu, P. Z., Huang, H. Y., Chang, J. G., & Tsai, J. J. (2019, July). A pan-cancer analysis of gene expressions, mutations and methylations in telomere related genes. In BASIC & CLINICAL PHARMACOLOGY & TOXICOLOGY (Vol. 125, pp. 25-25). 111 RIVER ST, HOBOKEN 07030-5774, NJ USA: WILEY.
  2. Chen, C. Y., Lin, Y. J., Wang, C. C., Lan, Y. H., Lan, S. J., & Sheu, M. J. (2019). Epigallocatechin-3-gallate inhibits tumor angiogenesis: involvement of endoglin/Smad1 signaling in human umbilical vein endothelium cells. Biomedicine & Pharmacotherapy, 120, 109491.
  3. Wang, C. C., Li, C. Y., Cai, J. H., Sheu, P. C. Y., Tsai, J. J., Wu, M. Y., … & Hou, M. F. (2019). Identification of Prognostic Candidate Genes in Breast Cancer by Integrated Bioinformatic Analysis. Journal of clinical medicine, 8(8), 1160.
  4. Wang, C. C., Wang, J. Y., Lee, T. E., Cheng, Y. Y., Morris-Natschke, S. L., Lee, K. H., & Hung, C. C. (2019). Tenulin and isotenulin inhibit P-glycoprotein function and overcome multidrug resistance in cancer cells. Phytomedicine, 53, 252-262.Lin, Y. N., Chang, H. Y., Wang, C. C., Chu, F. Y., Shen, H. Y., Chen, C. J., & Lim, Y. P. (2018). Oleanolic Acid Inhibits Liver X Receptor Alpha and Pregnane X Receptor to Attenuate Ligand-Induced Lipogenesis. Journal of agricultural and food chemistry, 66(42), 10964-10976.

2018

  1. Lin, Y. N., Wang, C. C., Chang, H. Y., Chu, F. Y., Hsu, Y. A., Cheng, W. K., … & Lim, Y. P. (2018). Ursolic Acid, a Novel Liver X Receptor α (LXRα) Antagonist Inhibiting Ligand-Induced Nonalcoholic Fatty Liver and Drug-Induced Lipogenesis. Journal of agricultural and food chemistry, 66(44), 11647-11662.
  2. Wang, C. C., Chung, Y. L., Chang, I. S., & Tsai, J. J. (2018). A semantic recommendation system for cancer-related articles. Encyclopedia with Semantic Computing and Robotic Intelligence, 2(02), 1850013.

2017

  1. T. Lin, J. J. Lu, Y. C. Chen, V. C. Kok, and J. T. Horng, “Diagnostic value of serum procalcitonin, lactate, and high-sensitivity C-reactive protein for predicting bacteremia in adult patients in the emergency department,” PeerJ, vol. 5, p. e4094, 2017.
  2. Lai IL, Yang CA, Lin PC, Chan WL, Lee YT, Yen JC, Chang YS, Chang JG. Long noncoding RNA MIAT promotes non-small cell lung cancer proliferation and metastasis through MMP9 activation. Oncotarget 8(58):98148-98162, 2017.
  3. Hung, D. Z., Tien, N., Lin, C. L., Lee, Y. R., Wang, C. C., Chen, J. J., & Lim, Y. P. (2017). Increased risk of chronic osteomyelitis after hip replacement: a retrospective population-based cohort study in an Asian population. European Journal of Clinical Microbiology & Infectious Diseases, 36(4), 611-617.
  4. Wang, C. C., & Tsai, J. J. (2017). Use of semantics in bio-informatics. Encyclopedia with Semantic Computing and Robotic Intelligence, 1(01), 1630017.
  5. Chen Shun-Tsung et al., (2017). Drug repurposing and therapeutic anti-microRNA predictions in oxidized low-density lipoprotein-induced the proliferation of vascular smooth muscle cell associated diseases, Journal of Bioinformatics and Computational Biology, 15(1), 1650043-1

2016

  1. Agustriawan D., Huang C. H., Sheu J. C., Lee S. C., Tsai, J. J. P., Kurubanjerdjit N., Ng K. L. (2016). DNA Methylation-regulated microRNA Pathways in Ovarian Serous Cystadenocarcinoma: a Meta-analysis, Computational Biology and Chemistry, 65, 154-164, Dec 2016.
  2. Huang C. H., Ciou J. S., Chen S. T., Kok V. C., Chung Y., Tsai, J. J. P., Kurubanjerdjit N., Huang C. Y., and Ng K. L. (2016) Identify Potential Drugs for Cardiovascular Diseases Caused by Stress-induced Genes in Vascular Smooth Muscle Cells, PeerJ, 4:e2478, Sep 2016.
  3. Chang YC, Chiu CC, You CY, Chan WL, Chang YS, Chang WH, Wu SM, Chou HL, Liu TC, Lu CY, Yang WK, Chang JG. An XIST-related small RNA regulates KRAS G-quadruplex formation beyond X-inactivation. Oncotarget 7:86713-86729,
  4. Chung, Y. L., Pan, C. H., Wang, C. C., Hsu, K. C., Sheu, M. J., Chen, H. F., & Wu, C. H. (2016). Methyl Protodioscin, a Steroidal Saponin, Inhibits Neointima Formation in Vitro and in Vivo. Journal of natural products, 79(6), 1635-1644.
  5. Hung, D. Z., Lin, C. L., Li, Y. W., Lin, Y. N., Lee, Y. R., Wang, C. C., … & Lim, Y. P. (2016). Association between antiepileptic drugs and hepatocellular carcinoma in patients with epilepsy: a population‐based case–control study. Brain and behavior, 6(11).

 

Book

  1. Tsai J. J. P., Ng K. L. (2018) Advanced Series in Electrical and Computer Engineering , Vol. 21, Application of Omics, AI and Blockchain in Bioinformatics Research. Editors: Jeffrey J. P. Tsai, Ka-Lok Ng, World Scientific.
  2. Tsai J. J. P., Ng K.L. (2017). Advanced Series in Electrical and Computer Engineering , Vol. 20, Computational Methods with Applications in Bioinformatics Analysis, Editors: Jeffrey J. P. Tsai, Ka-Lok Ng, World Scientific.

Book chapter

  1. Charles C.N. Wang and Jeffrey J. P. Tsai. (2018). Use of semantics in bio-informatics, Semantic Computing. pp. 191-195. US, Editors: Jeffrey Phillip C.Y. Sheu, World Scientific.
  2. Jing-Doo Wang. (2018). A novel approach to mine for genetic markers via comparing class frequency distributions of maximal repeats extracted from tagged whole genomic sequences, Bioinformatics in the Era of Post Genomics and Big Data, Editors: Prof. Ibrokhim Abdurakhmonov,Publisher, InTechOpen.
  3. Chien-Yuan Li, Rong-Ming Chen, Been-Chian Chien, Rouh-Mei Hu, Jeffrey J. P. Tsai. (2017). “Unsupervised clustering of time series gene expression data based on spectrum processing and autoregressive modeling.” in Computational Methods with Applications in Bioinformatics Analysis. World Scientific. 10.1142/9789813207981_0001.
  4. Pei-Lin Chen, Rong-Ming Chen, Been-Chian Chien, Rouh-Mei Hu, Jeffrey J. P. Tsai. (2017). “Gene ontology-based analysis of time series gene expression data using support vector machines.” in Computational Methods with Applications in Bioinformatics Analysis. World Scientific. 10.1142/9789813207981_0002
  5. Charles C.N. Wang, Phillip C.-Y. Sheu, Jeffrey J. P. Tsai (2017) “Semantic analytics of biomedical data” in Computational Methods with Applications in Bioinformatics Analysis. World Scientific. 10.1142/9789813207981_0004
  6. Wen-Pin Hu, Hui-Ting Lin, Jeffrey J. P. Tsai, Wen-Yih Chen (2017)” Investigating interactions between proteins and nucleic acids by computational approaches” n Computational Methods with Applications in Bioinformatics Analysis. World Scientific. 10.1142/9789813207981_0005
  7. Nilubon Kurubanjerdjit, Ka-Lok Ng (2017) Bioinformatics analysis of microRNA and protein-protein interaction in plant host-pathogen interaction system n Computational Methods with Applications in Bioinformatics Analysis. World Scientific. 10.1142/9789813207981_0006
  8. Hsiang-Chuan Liu, Pei-Chun Chang (2017) Choquet integral algorithm for T-cell epitope prediction using support vector machine n Computational Methods with Applications in Bioinformatics Analysis. World Scientific. 10.1142/9789813207981_0009

 

Conference

2019

  1. Efendi Zaenudin, Ezra B. Wijaya, Eskezeia Y. Dessie, David Agustriawan, Jeffrey J.P. Tsai, Chien-Hung Huang, Ka-Lok Ng, An Algorithm to Construct Network Motifs for Bioinformatics Study, Lecture Notes in Engineering and Computer Science: Proceedings of The International MultiConference of Engineers and Computer Scientists 2019, 13-15 March, 2019, Hong Kong, pp. 45-50.
  2. Lin, H.C., Wu J.E. & Wang, C. C.(2019, October)A Smartphone App to Neonatal Jaundice Detection using Deep Learning Model, The First International Symposium on Future ICT (Future ICT 2019)
  3. Wong, J.K., Lin, Y.Z., Tsai, J.J. & Wang, C. C. (2019, October)Machine Learning Classification Algorithms on Treadmill Exercise Data for Predicting Significant Coronary Artery Disease, The First International Symposium on Future ICT (Future ICT 2019) *Best Paper Awards

2018

  1. Zonyin Shae, Jeffrey J.P. Tsai, Transform Blockchain into Distributed Parallel Computing Architecture for Precision Medicine, The IEEE 38th International Conference on Distributed Computing Systems(ICDCS), July 2018.
  2. Jhih-Ying Chen, Chia-Min Chen, Pei-Chun Chang, Jeffrey J. P. Tsai (2018) Biological Network Analysis of Synthetic Pathogenicity Genes of Atherosclerosis. The 8th International Conference on Bioscience, Biochemistry and Bioinformatics (ICBBB 2018).
  3. Chang-Sheng Chiang, Pei-Chun Chang (2018) Inhibition Assessment of Anticancer Drugs for ALK Gene Variation Target. The 6th International Conference on Bioinformatics and Computational Biology (ICBCB 2018).
  4. Charles C.N. Wang, I-Seng Chang, Phillip C.Y. Sheu and Jeffrey J. P. Tsai1 (2018) Application of Semantic Computing in Cancer on Secondary Data Analysis. In 2018 Second IEEE International Conference on Robotic Computing (IRC2018).
  5. Ng K. L., Invited speaker, IMECS2018, 2018/3/15, Hong Kong. DISSECTING THE COMPLEX NATURE OF THE BIOLOGICAL NETWORKS
  6. Wijaya E. B., Erwandy L., Agustriawan D., Huang C. H., Tsai, J. J. P., Ng K. L. (2018). Utilizing imputation and meta-analysis to identify DNA-methylation-mediated microRNAs in ovarian cancer, LNCS/LNBI volume entitled: Algorithms for Computational Biology, Fifth International Conference, AlCoB 2018 Hong Kong, June 25-27, 2018 Jesper Jansson, Carlos Martín-Vide, Miguel A. Vega-Rodríguez.
  7. Ng K. L., Huang C. H., Peng C. J. (2018). Characterizing the 3-node and 4-node motifs in both cancer networks and signal transduction networks, Asia Pacific Bioinformatics Conference, Jan 15-18, 2018, Japan.
  8. C. Chen, H. T. Chu, V. C. Kok, , and J. J. Tsai,“ Analysis Association between Sitagliptin and Acute Pancreatitis in Type 2 Diabetes Patients of Taiwan: A Population-Based study.(2018 International Conference on Medical and Health Informatics, ICMHI 2018).
  9. Eskezeia Y. Dessie et al., Identification of Several Core Overexpressed MicroRNAs that Could Predict Survival in Patients with Ovarian Cancer. Proceedings of The 18th IEEE International Conference on Bioinformatics and Bioengineering (BIBE2018), 263-268. The 18th IEEE International Conference on Bioinformatics and Bioengineering (BIBE2018), Oct. 29-31, 2018, Taiwan
  10. Taguchi Y-h & Ka-Lok Ng. Tensor decomposition–based unsupervised feature extraction for integrated analysis of TCGA data on microRNA expression and promoter methylation of genes in ovarian cancer. Proceedings of The 18th IEEE International Conference on Bioinformatics and Bioengineering (BIBE2018), 195-200. Oct. 29-31, 2018, Taichung, Taiwan
  11. Jing-Doo Wang, Reducing the Gap between Phenotypes and Genotypes via Comparing Tagged Whole Genomic Sequences, The 12th International Conference on Advancements in Bioinformatics and Drug Discovery, (Adv.Bioinformatics 2018) November 26-27, 2018 Dublin, Ireland (Journal of Proteomics \& Bioinformatics, ISBN 0974-276X, DOI 10.417/0974-276X-C5-1242)
  12. Jing-Doo Wang and Yi-Chun Wang, Constructing the Relationship Tree of All Viruses via Genomic Sequences. The 18th annual IEEE International Conference on Bioinformatics and Bioengineering(BIBE 2018),10-13, October 29-31, 2018, Taichung, Taiwan.

2017

  1. Shae, Z., & Tsai, J. J. (2017, June). On the Design of a Blockchain Platform for Clinical Trial and Precision Medicine. In Distributed Computing Systems (ICDCS), 2017 IEEE 37th International Conference on (pp. 1972-1980). IEEE.
  2. Yali Xiao, Ssu-Min Fang, Yun-Hsin Tsou, Cheng-Fang Tsai, and Pei-Chun Chang (2017) The Potential Inhibitors in Chinese Traditional Medicine for Bcr-AblT315I Mutation of Chronic Myelogenous Leukemia. The 21st Annual International Conference on Research in Computational Molecular Biology (RECOMB)
  3. Hsiao-Ting Chen, Yung-Hsin Chen, and Pei-Chun Chang (2017) Discovery of Synthetic Pathogenicity Genes of Atherosclerosis. The 4th International Conference on Multidisciplinary Trend in Academic Research.
  4. Jing-Doo Wang, Yi-Chun Wang and Rouh-Mei Hu and Jeffrey Tsai (2017) Extracting the Co-occurrences of DNA Maximal Repeats in both Human and Viruses. The 17th IEEE International Conference on BioInformatics and BioEngineering (BIBE 2017).
  5. Jing-Doo Wang, Invited speaker, FSDM2017, 2017/11/26. Potential Applications using the Class Frequency Distribution of Maximal Repeats from Tagged Sequential Data.
  6. Wang, C.-Y., Wu, T.-F., Yao, Y.-L., Yang, W.-M. (2017) PAX3-FOXO1 loads on heterochromatin and causes replication stress, The Joint Annual Conference of Biomedical Science, March 25-26, 2017, Taipei, Taiwan.
  7. Ciou J. S., Lim E., Li W. H., Tsai J. J. P., Kurubanjerdjit N., Huang C. H., Ng K. L., (2017). GEMtf – Database of Time-course Expression Profiles of Maize Transcription Factors by Using Biclustering Algorithm. The International Multi Conference of Engineers and Computer Scientists 2017. 15-17 March, 2017, Hong Kong.
  8. Yao GD, Huang HY, Chan WL, Chang JG. Establishment of a clinically available genome analysis and report generation system – an example of exonic sequencing. The Thirteenth Chinese Laboratory Medicine Conference. 2017 in City University of Hong Kong.
  9. Chen YM, Chan WL, Chang JG. The use of word exploration techniques to explore the type and function of drug metabolism genes for its clinical application. The Thirteenth Chinese Laboratory Medicine Conference. 2017 in City University of Hong Kong
  10. Lin CW, Huang HY, Chan WL, Chang JG. Analysis of Gene Expression in Oral Cancer. The Thirteenth Chinese Laboratory Medicine Conference. 2017 in City University of Hong Kong.
  11. Jane MZ, Huang HY, Chan WL, Chang JG. Clinical application of macrophage phase analysis and report integration system for intestinal. The Thirteenth Chinese Laboratory Medicine Conference. 2017 in City University of Hong Kong.
  12. Lin YC, Huang HY, Chan WL, Chang JG. Establishment and Clinical Application of Immune repertoire Automation Analysis Platform. The Thirteenth Chinese Laboratory Medicine Conference. 2017 in City University of Hong Kong.
  13. Chang YS, Huang HY, Chan WL, Chang JG. The integrated RNA-seq automated analysis platform is used in oral cancer research. The Thirteenth Chinese Laboratory Medicine Conference. 2017 in City University of Hong Kong.

 

2016

  1. Liang YC, Lee CC, Yao YL*, Lai CC, M. Schmitz LM, and Yang WM (2016). SUMO5, a Novel Poly-SUMO Isoform, Regulates PML Nuclear Bodies. Scientific Reports, 6, 26509.
  2. Huang C. H., Weng S. J., Korla P. K., Fang J. F., Tsai, J. J. P., Kurubanjerdjit N., Ng K. L., (2016), Identification and analysis of palindromes for RNA sequences, The 16th annual IEEE International Conference on Bioinformatics and Bioengineering, Oct. 31 – Nov. 2, 2016, Taichung.
  3. Chan W.L., Yeh M. C., Wang J.D., Chang J.G., Tsai, J. J. P., Genome-wide functional identification of maximal consensus patterns derived from multiple species piRNAs, The 16th annual IEEE International Conference on Bioinformatics and Bioengineering, Oct. 31 – Nov. 2, 2016, Taichung.
  4. Jiang B. R., Wu W. Y., Chien C. H., Tsai, J. J. P, Chan W. L. (2016). piRNAtarget: the integrated database for mining functionality of piRNA and its targets, The 16th annual IEEE International Conference on Bioinformatics and Bioengineering, Oct. 31 – Nov. 2, 2016, Taichung.
  5. Wang J.D., Chan W.L., Wang C.C.N., Tsai, J. J. P., Chang J.G. (2016, Oct). Mining Distinctive DNA Patterns from the Upstream of Human Coding & Non-Coding Genes via Class Frequency Distribution. 2016 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology (IEEE CIBCB2016), Chiang Mai, Thailand.
  6. Chen, Rong-Ming Chen, Jeffrey J. P. Tsai, Rouh-Mei Hu*, (2016, Nov). Fine Classification of Human Gut Microbiota by Using Hierarchical Clustering Approach. The 16th IEEE International Conference on Bioinformatics and Bioengineering (BIBE 2016), Taichung, Taiwan.
  7. Wang, C. C., Chang, P. C., Sheu, P. C., & Tsai, J. J. (2016, October). A Comparison Study of Reverse Engineering Gene Regulatory Network Modeling. In Bioinformatics and Bioengineering (BIBE), 2016 IEEE 16th International Conference on (pp. 356-362). IEEE.
  8. Wang, C. C., Lee, Y. L., Sheu, P. C., & Tsai, J. J. (2016, October). Application of Latent Semantic Analysis to Clustering of Cardiovascular Gene Ontology. In Bioinformatics and Bioengineering (BIBE), 2016 IEEE 16th International Conference on (pp. 363-368). IEEE.
  9. Ru-Yi Tsai, Qiao-Jun Zheng, Yu-Ting Huang, Pei-Chun Chang, Jou-Wei Lin, Fu-Chun Chiu, Phillip C. Y. Sheu, Jeffrey J. P. Tsai (2016) Comorbid relationship in recurrent vascular thrombosis of coronary artery diseases. The 3rd International Conference on MultidisciplinaryTrend in Academic Research.